Bigelow Laboratory for Ocean Sciences

Ocean Life, Planet Health

Publications

McClellan - Publications

2007

  • Baer, K. and D.A. McClellan. 2007. Molecular coevolution of the vertebrate cytochrome c1 and Rieske iron sulfur proteins in the cytochrome bc1 complex. International Journal of Bioinformatics Research and Applications 3:456-470.
  • Benavides, E., R. Baum, D.A. McClellan, and J.W. Sites. 2007. Molecular phylogenetics of the lizard genus Microlophus (Squamata: Tropiduridae): Aligning and retrieving indel signal from nuclear introns. Systematic Biology 56:776-797.
  • Carroll, H.D., M.T.W. Ebbert, M. Clement, Q.O. Snell, W.A. Beckstead, T.D. O'Connor, and D.A. McClellan. 2007. DNA alignment benchmark based on tertiary structure of encoded proteins. Bioinformatics 23:2648-2649.
  • Chamala, S., W.A. Beckstead, M.J. Rowe, and D.A. McClellan. 2007. Evolutionary selective pressure on three mitochondrial SNPs in consistent with their influence on metabolic efficiency in Pima Indians. International Journal of Bioinformatics Research and Applications 3:504-522.
  • Ebbert, M.T.W., T.D. O'Connor, W.A. Beckstead, M.J. Clement, and D.A. McClellan. 2007. Pharmacogenomics: Analyzing SNPs in the CYP2D6 gene using amino acid properties. International Journal of Bioinformatics Research and Applications 3:471-479.
  • Porter, M., T. Cronin, D.A. McClellan, and K. A. Crandall. 2007. Molecular characterization of crustacean visual pigments and the evolution of pancrustacean opsins. Molecular Biology and Evolution 24:253-268.

2008

  • Balzotti MRB, McClellan DA, Coleman C (2008) Expression and evolutionary relationships of the Chenopodium quinoa 11S seed storage protein gene.  International Journal of Plant Science 169:281-291.
  • Lewis-Rogers N, McClellan D, Crandall KA (2008) The evolution of foot-and-mouth disease virus: Impacts of recombination and selection. Infection, Genetics and Evolution 8:786-798.
  • McClellan DA, Ellison DD (2008) Assessing and improving the accuracy of detecting protein adaptation with the TreeSAAP analytical software. Proceedings of the Biotechnology and Bioinformatics Symposium 5:11-17.

2009

  • Beckstead WA, Ebbert MTW, Rowe MJ, McClellan DA (2009) Evolutionary pressure on mitochondrial cytochrome b is consistent with role of CytbI7T affecting longevity during caloric restriction. PLoS ONE 4(6):e5836
  • Carroll H, Clement M, Snell Q, McClellan DA (2009) ChemAlign: Biologically relevant multiple sequence alignment using physicochemical properties. 2009 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2009, art# 5341858:70-73

2010

  • McClellan DA, Ellison DD (2010) Assessing and improving the accuracy of detecting protein adaptation with the TreeSAAP analytical software. International Journal of Bioinformatics Research and Applications 6(2):120-133.