Bigelow Laboratory for Ocean Sciences

Ocean Life, Planet Health

2010 Publications

2010 Publications


  • Abrahamsen MB, Browman HI, Fields DM, Skiftesvik AB (in press) The three-dimensional prey field of the northern krill, Meganyctiphanes norvegica, and the escape responses of their copepod prey. Marine Biology 157(6):1251-1258.
  • Al-Azri AR, Piontkovski SA, Al-Hashmi KA, Goés JI, do Gomes HR (2010) Chlorophyll a as a measure of seasonal coupling between phytoplankton and the monsoon periods in the Gulf of Oman. Aquatic Ecology 44(2):449-461.
  • Allen M, Wilson W (2010) Survival of the fattest. Planet Earth (Spring):14-15.
  • Boo SM, Kim HS, Shin W, Boo GH, Cho SM, Jo BY, Kim J-H, Kim JH, Yang EC, Siver PA, Wolfe AP, Bhatacharya D, Andersen RA, Yoon HS (2010) Complex phylogeographic patterns in the freshwater alga Synura provide new insights into ubiquity vs. endemism in microbial eukaryotes. Molecular Ecology 19(19):4328-4338.
  • Countway PD, Vigil PD, Schnetzer A, Moorthi SD, Caron DA (2010) Seasonal analysis of protistan community structure and diversity at the USC Microbial Observatory (San Pedro Channle, CA). Limnology and Oceanography 55(6):2381-2396.
  • De Jonge MD, Holzner C, Baines SB, Twining BS, Ignatyev K, Diaz J, Howard DL, Legnini D, Miceli A, McNulty I, Jacobsen CJ, Vogt S (2010) Quantitative 3D elemental microtomography of Cyclotella meneghiniana at 400-nm resolution. Proceedings of the National Academy of Sciences, USA 107(36):15676-15680.
  • Denman K, Sathyendranath S, Sieracki ME, Vanden Burghe E (2010) Observing ocean ecosystems: Needs, capabilities, and gaps. In: Proceedings of the "OceanObs '09: Sustained Ocean Observations and Information for Society" Conference (Vol 1), Venice, Italy, 21-25 September 2009. Hall J, Harrison DE, Stammer D (eds.). ESA Publication WPP-306.
  • Emerson D (2010) Leptothrix. Encyclopedia of Geobiology, Kappler A (ed.). Springer-Verlag.
  • Emerson D, Fleming EJ, McBeth JM (2010) Iron-oxidizing bacteria: An environmental and genomic perspective. Annual Review of Microbiology 64:561-583.
  • Emerson D, Moyer CL (2010) Microbiology of seamounts: Common patterns observed in community structure. Oceanography 23(1):148-163.
  • Fields DM (2010) Orientation affects the sensitivity of Acartia tonsa to fluid mechanical signals. Marine Biology 157(3):505-514.
  • Fischer MG, Allen MJ, Wilson WH, Suttle CA (2010) Giant virus with a remarkable complement of genes infects marine zooplankton. Proceedings of the National Academy of Sciences, USA 107(45):19508-19513.
  • Gilg IC, Amaral-Zettler LA, Countway PD, Moorthi S, Schnetzer A, Caron DA (2010) Phylogenetic affiliations of mesopelagic Acantharia and Acantharian-like environmental 18S rRNA genes off the southern California coast. Protist 161(2):197-211.
  • Hill LS, Richardson TL, Profeta LTM, Shaw TJ, Hintz CJ, Twining BS, Lawrenz E, Myrick ML (2010) Construction, figures of merit, and testing of a single-cell fluorescence excitation spectroscopy system. Review of Scientific Instruments 81(1):art no 013103. 
  • Hind AJ, Rauschenberg CD, Johnson JE, Yang M, Matrai PA (2010) The use of algorithms to predict surface seawater dimethyl sulphide concentrations in the SE Pacific, a region of steep gradients in primary productivity, biomass, and mixed layer depth. Biogeosciences Discussion 7(4):5305-5345.
  • Incze L, Xue H, Wolff N, Xu D, Wilson C, Steneck R, Wahle R, Lawton P, Pettigrew N, Chen Y (2010) Connectivity of lobster (Homarus americanus) populations in the coastal Gulf of Maine: Part II. Coupled biophysical dynamics. Fisheries Oceanography 19(1):1-20
  • Kegel JU, Blaxter M, Allen MJ, Metfies K, Wilson WH, Valentin K (2010) Transcriptional host-virus interaction of Emiliania huxleyi (Haptophyceae) and EhV-86 deduced from combined analysis of expressed sequence tags and microarrays. European Journal of Phycology 45(1):1-12.
  • Krause JW, Brzezinski MA, Landry MR, Baines SB, Nelson DM, Selph KE, Yaylor AG, Twining BS (2010) The impact of biogenic silica detritus and large diatoms on Si cycling in the euphotic zone of the eastern equatorial Pacific. Limnology and Oceanography 55:2608-2622.
  • Lear G, McBeth JM, Boothman C, Gunning DJ, Ellis BL, Lawson RS, Morris K, Burke IT, Bryan ND, Brown AP, Livens FR, Lloyd JR (2010) Probing the biogeochemical behavior of technetium using a novel nuclear imaging approach. Environmental Science and Technology 44(1):156-162
  • McClellan DA, Ellison DD (2010) Assessing and improving the accuracy of detecting protein adaptation with the TreeSAAP analytical software. International Journal of Bioinformatics Research and Applications 6(2):120-133.
  • Núñez-Milland DR, Baines SB, Vogt S, Twining BS (2010) Quantification of phosphorus in single cells using synchrotron X-ray fluorescence. Journal of Synchrotron Radiation 17(4):560-566.
  • Orellana MV, Matrai PA, Janer M, Rauschenberg CD (2010) DMSP storage in Phaeocystis (Prymnesiophyceae) secretory vesicles. Journal of Phycology 47(1):112-117.
  • Painter SC, Poulton AJ, Allen JT, Pidcock R, Balch WM (2010) The COPAS '08 expedition to the Patagonian Shelf: Physical and environmental conditions during the 2008 coccolithophore bloom. Continental Shelf Research 30(18):1907-1923.
  • Reyes-Prieto A, Yoon HS, Moustafa A, Yang ECAndersen RA, Boo SM, Nakayama T, Ishida K-I, Bhattacharya D (2010) Differential gene retention in plastids of common recent origin. Molecular Biology and Evolution 27(7):1530-1537.
  • Sieracki ME, Benfield M, Hanson A, Davis C, Pilskaln CH, Checkley D, Sosik HM, Ashjian C, Culverhouse P, Cowen R, Lopes R, Balch W, Irigoien X (2010) Optical plankton imaging and analysis systems for ocean observation. In: Proceedings of the "OceanObs '09: Sustained Ocean Observations and Information for Society" Conference (Vol. 2), Venice, Italy, 21-25 September 2009, Hall J, Harrison DE, Stammer D (eds.). ESA Publication WPP-306, 2010.
  • Swan BK, Ehrhardt CJ, Reifel KM, Moreno LI, Valentine DL (2010) Archaeal and bacterial communities respond differently to environmental gradients in anoxic sediments of a California hypersaline lake, the Salton Sea. Applied and Environmental Microbiology 76(3):757-768.
  • Twining BS, Núñez-Milland D, Vogt S, Johnson RS, Sedwick PN (2010) Variations inSynechococcus cell quotas of phosphorus, sulfur, manganese, iron, nickel, and zinc within mesoscale eddies in the Sargasso Sea. Limnology and Oceanography 55:492-506.
  • Vaughn JM, Balch WM, Novotny JF, Vining CL, Palmer JM Jr, Kneifel DM, Bell AL (2010) Isolation of Emiliana huxleyi viruses from the Gulf of Maine. Aquatic Microbial Ecology 58(2):109-116.
  • Verbruggen H, Maggs CA, Saunders GW, Le Gall L, Yoon HS, De Clerck O (2010) Data mining approach identifies research priorities and data requirements for resolving the red algal tree of life. BMC Evolutionary Biology 10(1):16.
  • Vigil P, Countway PD, Rose J, Lonsdale DJ, Gobler CJ, Caron DA (2009) Rapid shifts in dominant taxa among microbial eukaryotes in estuarine ecosystems. Aquatic Microbial Ecology 54(1):83-100.
  • Yang EC, Scott J, West JA, Orlova E, Gauthier D, Küpper FC, Yoon HS, Karsten U (2010) New taxa of the Porphyridiophyceae (Rhodophyta): Timspurckia oligopyrenoides gen. et sp. nov. and Erythrolobus madagascarensis sp. nov. Phycologia 49:606-616.
  • Yoon HS, Zuccarello GC, Bhattacharya D (2010) Evolutionary history and taxonomy of red algae. In: Red Algae in the Genomic Age. Seckbach J, Chapman DJ, Weber A (eds.). Springer, Dordrecht, Heidelberg, London, New York, pp 25-42.
  • Zhang J, Spitz YH, Steele M, Ashjian C, Campbell R, Berline L, Matrai P (2010) Modeling the impact of declining sea ice on the Arctic marine planktonic ecosystem. Journal of Geophysical Research C: Oceans 115(10):C10015.