Bigelow Laboratory for Ocean Sciences

Ocean Life, Planet Health

2009 Publications

2009 Publications


  • Andersen RA (2009) Meeting Report: Seventh International Chrysophyte Symposium. An international meeting at Connecticut College, New London, CT, USA; June 22-26, 2008. Protist 160(1):5-8.
  • Baker-Austin C, McArthur JV, Lindell AH, Wright MS, Tuckfield RC, Gooch J, Warner L, Oliver J, Stepanauskas R (2009) Multi-site analysis reveals widespread antibiotic resistance in the marine pathogen Vibrio vulnificus. Microbial Ecology 57(1):151-159
  • Balch WM, Plueddeman AJ, Bowler BC, Drapeau DT (2009) Chalk-Ex-Fate of CaCO3 particles in the mixed layer: Evolution of patch optical properties. Journal of Geophysical Research C: Oceans 114(7):C07020
  • Beckstead WA, Ebbert MTW, Rowe MJ, McClellan DA (2009) Evolutionary pressure on mitochondrial cytochrome b is consistent with role of CytbI7T affecting longevity during caloric restriction. PLoS ONE 4(6):e5836
  • Bhattacharya D, Yoon HS, Hedges SB, Hackett JD (2009) Eukaryotes (Eukaryota). In: Timetree of Life, Hedges SB, Kumar S (eds.). Oxford University Press, New York, pp 116-120.
  • Brodie J, Andersen RA, Kawachi M, Millar AJK (2009) Endangered algal species and how to protect them. Phycologia 48(5):423-438
  • Caron DA, Countway PD (2009) Hypotheses on the role of the protistan rare biosphere in a changing world. Aquatic Microbial Ecology 57(3):227-238.
  • Caron DA, Gast RJ, Countway PD, Heidelberg KB (2009) Microbial eukaryote diversity and biogeography. Microbe 4(2):71-77.
  • Caron DA, Worden AZ, Countway PD, Demir E, Heidelberg KB (2009) Protists are microbes too: A perspective. ISME Journal 3(1):4-12.
  • Caron DA, Countway PD, Savai P, Gast RJ, Schnetzer A, Moorthi SD, Dennett MR, Moran DM, Jones AC (2009) Defining DNA-based operational taxonomic units for microbial-eukaryote ecology. Applied and Environmental Microbiology 75(18):5797-5808.
  • Carroll H, Clement M, Snell Q, McClellan DA (2009) ChemAlign: Biologically relevant multiple sequence alignment using physicochemical properties. 2009 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2009, art# 5341858:70-73
  • Chan CS, Fakra SC, Edwards DC, Emerson D, Banfield JF (2009) Iron oxyhydroxide mineralization on microbial extracellular polysaccharides. Geochimica et Cosmochimica Acta 73(13):3807-3818
  • Dalbec AA, Twining BS (2009) Remineralization of bioavailable iron by a heterotrophic dinoflagellate. Aquatic Microbial Ecology 54(3):279-290
  • Emerson D (2009) Dedication. Geomicrobiology Journal 26(8):251
  • Emerson D (2009) Potential for iron-reduction and iron-cycling in iron. Geomicrobiology Journal 26(8):639-647
  • Emerson D (2009) Seamount microbiology. Geomicrobiology Journal 26(8):249-250
  • Emerson D, Wilson W (2009) Giving microbial diversity a home. Nature Reviews Microbiology 7(11):758
  • Evans C, Pond DW, Wilson WH (2009) Changes in Emiliania huxleyi fatty acid profiles during infection with E. huxleyi virus 86: Physiological and ecological implications. Aquatic Microbial Ecology 55(3):219-228
  • Geraldi NR, Wahle RA, Dunnington M (2009) Habitat effects on American Lobster (Homarus americanus) movement and density: Insights from georeferenced trap arrays, seabed mapping, and tagging. Canadian Journal of Fisheries and Aquatic Sciences 66(3):460-470
  • Giner J-L, Zhao H, Boyer HL, Satchwell MF, Andersen RA (2009) Sterol Chemotaxonomy of marine pelagophyte algae. Chemistry and Biodiversity 6(7):1111-1130
  • Gomes H do R, Prabhu Matondkar SG, Parab SG, Goés JI, Pednekar S, Al-Arzri ARN, Thoppil PG (2009) Unusual blooms of the green Noctiluca miliaris (Dinophyceae) in the Arabian Sea during the winter monsoon. In: Indian Ocean: Biogeochemical Processes and Ecological Variability. Wiggert D, Hood RR, Naqvi SWA, Smith SL, Brink KH (eds.). AGU Book Series, pp 347-363.
  • Gordon HR, Smyth TJ, Balch WM, Chris Boynton G, Tarran GA (2009) Light scattering by coccoliths detached from Emiliania huxleyi. Applied Optics 48(31):6059-6073
  • Huntington TG, Richardson AD, McGuire KJ, Hayhoe K (2009) Climate and hydrological changes in the northeastern United States: Recent trends and implications for forested and aquatic ecosystems. Canadian Journal of Forest Research 39(2):199-212
  • Jørgensen NOG, Stepanauskas R (2009) Biomass of pelagic fungi in Baltic rivers. Hydrobiologia 623(1):105-112
  • Larsen PF, Phinney DA, Rubin F, Justice D (2009) Classification of boreal macrotidal littoral zone habitats in the Gulf of Maine: Comparison of IKONOS and CASI multispectral imagery. Geocarto International 24(6):457-472
  • Mackinder LCM, Worthy CA, Biggi G, Hall M, Ryan KP, Varsani A, Harper GM, Wilson WH, Brownlee C, Schroeder DC (2009) A unicellular algal virus, Emiliania huxleyi virus 86, exploits an animal-like infection strategy. Journal of General Virology 90(9):2306-2316
  • Moisan T, Goés JI, Neale P (2009) Mycosporine-like amino acids in phytoplankton: Biochemistry, physiology, and optics. In: Marine Phytoplankton. Kersey WT, Munger SP (eds.). Nova Publishers, pp 119-143.
  • Naik P, D'Sa EJ, Goés JI, Gomes HDR (2009) Absorption properties along the 70-m isobath in the southeastern Nering Sea during July 2008. MTS/IEEE Biloxi - Marine Technology for Our Future: Global and Local Challenges, OCEANS 2009, art no 5422364.
  • Naik P, D'Sa EJ, Goés JI, Gomes HDR (2009) Particulate absorption properties from MODIS ocean color and four in-situ transects in the southeastern Bering Sea shelf during July 2008. Proceedings of SPIE - The International Society for Optical Engineering, 7473, art# 747302
  • Pagarete A, Allen MJ, Wilson WH, Kimmance SA, De Vargas C (2009) Host-virus shift of the sphingolipid pathway along an Emiliania huxleyi bloom: Survival of the fattest. Environmental Microbiology 11(11):2840-2848
  • Rampen SW, Schouten S, Elda Panoto F, Bringk M, Andersen RA, Muyzer G, Abbas B, Sinninghe Damsté JS (2009) Phylogenetic position of Attheya longicornis and Attheya septentrionalis (Bacillariophyta). Journal of Phycology 45(2):444-453
  • Reeb VC, Peglar MT, Yoon HS, Bai JR, Wu M, Shiu P, Grafenberg JL, Reyes-Prieto A, Rümmele SE, Gross J, Bhattacharya D (2009) Interrelationships of chromalveolates within a broadly sampled tree of photosynthetic protists. Molecular Phylogenetics and Evolution 53(1):202-211.
  • Rose JM, Vora NM, Countway PD, Gast RJ, Caron DA (2009) Effects of temperature on growth rate and gross growth efficiency of an Antarctic bacterivorous protist. ISME Journal 3(2):252-260.
  • Rustad L, Campbell J, Cox R, Dukes J, Huntington TG, Magill A, Richardson A, Mohan J, Pontius J, Rodenhouse NL, Watson MR (2009) NE Forests 2100: A sythesis of climate change impacts on forests of the Northeastern US and Eastern Canada. Canadian Journal of Forest Research 39(2):iii-iv
  • Rybalka N, Andersen RA, Kostikov I, Mohr KI, Massalski A, Olech M, Friedl T (2009) Testing for endemism, genotype diversity and species concepts in Antarctic terrestrial micralgae of the Trionemataceae (Stramenopiles, Xanthophycaea). Environmental Microbiology 11(3):554-565
  • Smirnov A, Holben BN, Slutsker I, Giles DM, McClain CR, Eck TF, Sakerin SM, Macke A, Croot P, Zibordi G, Quinn PK, Sciare J, Kinne S, Harvcy M, Smyth TJ, Piketh S, Zielinski T, Proshutinsky A, Goés JI, Nelson NB, Larouche P, Radionov VF, Goloub P, Krishna Moorthy K, Matarrese R, Robertson EJ, Jourdin F (2009) Maritime Aerosol Network as a component of Aerosol Robotic Network. Journal of Geophysical Research D: Atmosphere 114(6):D06204.
  • Smith SA, Unz RF, Emerson D, Clancy JL (2009) Joint Task Group. Section 9240: Iron and sulfur bacteria. Standard Methods fot eh Examination of Water and Wastewater. www.standardmethods.org.
  • Wahle RA, Gibson M, Fogarty M (2009) Distinguishing disease impacts from larval supply effects in a lobster fishery collapse. Marine Ecology Progress Series 376:185-192
  • Wahle RA, Wilson C, Parkhurst M, Bergeron CE (2009) A vessel-deployed passive postlarval collector to assess settlement of the American lobster Homarus americanus. New Zealand Journal of Marine and Freshwater Research 43(1):465-474
  • Weynberg KD, Allen MJ, Ashelford K, Scanlan DJ, Wilson WH (2009) From small hosts come big viruses: The complete genome of a second Ostreococcus tauri virus, OtV-1. Environmental Microbiology 11(11):2821-2839
  • Wilson W (2009) Small things considered. Microbe 4(7):350
  • Wilson WH, Van Etten JL, Allen MJ (2009) The Phycodnaviridae: The story of how tiny giants rule the world. Current Topics in Microbiology and Immunology 328:1-42
  • Woyke T, Xie G, Copeland A, Ganzález JM, Han C, Kiss H, Saw JH, Senin P, Yang C, Chattterji S, Cheng J-F, Eisen JA, Sieracki ME, Stepanauskas R (2009) Assembling the marine metagenome, one cell at a time. PLoS ONE 4(4):e5299
  • Wu M, Comeron JM, Yoon HS, Bhattacharya D (2009) Unexpected dynamic gene family evolution in algal actins. Molecular Biology and Evolution 26(2):249-253.
  • Yoon HSAndersen RA, Boo SM, Bhattacharya D (2009) Stramenopiles. In: Encyclopedia of Microbiology, third edition. Schaechter M (ed.). Elsevier Ltd, Oxford, UK, pp 721-731.
  • Yoon HS, Nakayama T, Reyes-Prieto A, Andersen RA, Boo SM, Ishida K-I, Bhattacharya D (2009) A single origin of the photosynthestic organelle in different Paulinella lineages. BMC Evolutionary Biology 9(1):98