Bigelow Laboratory for Ocean Sciences

Ocean Life, Planet Health

2008 Publications

2008 Publications

  • Allen MJ, Wilson WH (2008) Aquatic virus diversity accessed through omic techniques: A route map to function. Current Opinion in Microbiology 11:226-232
  • Andersen RA (2008) Public outreach tools: Moon boards. Limnology and Oceanography Bulletin 17:8-9
  • Andrews JE, Samways G, Shimmield GB (2008) Historical storage budgets of organic carbon, nutrient and contaminant elements in saltmarsh sediments: biogeochemical context for managed realignment, Humber Estuary, UK. Science of the Total Environment 405:1-13
  • Bailey KE, Toole DA, Blomquist B, Najjar RG, Huebert B, Kieber DJ, Kiene RP, Matrai PA, Westby GR, del Valle DA (2008) Dimethylsulfide production in Sargasso Sea eddies. Deep-Sea Research Part II: Topical Studies in Oceanography 55:1491-1504
  • Baker-Austin C, McArthur JV, Tuckfield RC, Najarro M, Lindell AH, Gooch J, Stepanauskas R (2008) Antibiotic resistance in the shellfish pathogen Vibrio parahaemolyticus isolated from the coastal water and sediment of Georgia and South Carolina, USA. Journal of Food Protection 71:2552-2558
  • Balch WM, Drapeau DT, Bowler BC, Booth ES, Windecker LA, Ashe A (2008) Space-time variability of carbon standing stocks and fixation rates in the Gulf of Maine, along the GNATS transect between Portland, ME, USA, and Yarmouth, Nova Scotia, Canada. Journal of Plankton Research 30:119-139
  • Balch WM, Fabry V (2008) Ocean acidification: documenting its impact on calcifying phytoplankton at basin scales.  Marine Ecology Progress Series. 373: 239–247, doi: 10.3354/meps07801
  • Balzotti MRB, Thornton JN, Maughan PJ, McClellan DA, Stevens MR, Jellen EN, Fairbanks DJ, Coleman C (2008) Expression and evolutionary relationships of the Chenopodium quinoa 11S seed storage protein gene.  International Journal of Plant Science 169:281-291.
  • Breuer E, Law G, Woulds C, Cowie G, Shimmield G, Peppe O, Schwartz M, McKinlay S (2008) Sedimentary oxygen consumption and microdistribution at sites across the Arabian Sea oxygen minimum zone (Pakistan margin). Deep-Sea Research II 56:296–304
  • Breuer E, Shimmield G, Peppe O (2008) Assessment of metal concentrations found within a North Sea drill cuttings pile. Marine Pollution Bulletin 56:1310–1322
  • Christensen J (2008) Sedimentary carbon oxidation and denitrification on the shelf break of the Alaskan Beaufort and Chukchi Seas. Open Oceanography Journal 2: 6-17
  • Christensen J, Shimada K, Semiletov I, Wheeler PA (2008) Chlorophyll response to shelf-break upwelling and winds in the Chukchi Sea, Alaska, in Autumn. Open Oceanography Journal 2: 34-53
  • Cleland D, Krader P, Emerson D (2008) Use of the DiversiLab repetitive sequence-based PCR system for genotyping and identification of archaea.  Journal of Microbiological Methods 73:172-178.
  • Druschel GK, Emerson D, Sutka R, Suchecki P, Luther GW (2008) Low oxygen and chemical kinetic constraints on the geochemical niche of neutrophilic iron (II) oxidizing microorganisms. Geochemica Cosmochimica Acta 72:3358-3370.
  • Emerson D, Agulto L, Liu H, Liu L (2008) Identifying and characterizing bacteria in an era of genomics and proteomics. BioScience 58:925-936
  • Evans C, Wilson WH (2008) Preferential grazing of Oxyrrhis marina on virus-infected Emiliania huxleyi. Limnology and Oceanography 53:2035-2040
  • Fabry VJ, Langdon C, Balch WM, Dickson AG, Feely RA, Hales B, Hutchins DA, Kleypas JA, Sabine CL (2008) Ocean acidification's effects of marine ecosystems and biogeochemistry. Eos 89:143
  • Frada M, Probert I, Allen MJ, Wilson WH, De Vargas C (2008) The "Cheshire Cat" escape strategy of the coccolithophore Emiliania huxleyi in response to viral infection. Proceedings of the National Academy of Sciences of the United States of America 105:15944-15949
  • Fricke WF, Wright MS, Lindell AH, Harkins DM, Baker-Austin C, Ravel J, Stepanauskas R (2008) Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5. Journal of Bacteriology 190:6779-6794
  • Gabric AJ, Matrai PA, Kiene RP, Cropp R, Dacey JWH, DiTullio GR, Najjar RG, Simo R, Toole DA, delValle DA, Slezak D (2008) Factors determining the vertical profile of dimethylsulfide in the Sargasso Sea during summer. Deep-Sea Research Part II: Topical Studies in Oceanography 55:1505-1518
  • Gomes H do R, Goés J, Matondkar SGP, Parab SG, Al-Azri ARN, Thoppil PG (2008) Blooms of Noctiluca miliaris in the Arabian Sea--an in situ and satellite study. Deep-Sea Research Part I: Oceanographic Research Papers 55:751-765
  • Hochella Jr. MF, Lower SK, Maurice PA, Penn RL, Sahai N, Sparks DL, Twining BS (2008) Nanominerals, mineral nanoparticles, and earth systems. Science 319:1631-1635
  • Hood R, Naqvi W, Wiggert J, Goés J, Coles V, McCreary J, Bates N, Karuppasamy PK, Mahowald N, Seitzinger S, Meyers G (2008) Research opportunities and challenges in the Indian Ocean. Eos 89:125-126
  • Ishoey T, Woyke T, Stepanauskas R, Novotny M, Lasken RS (2008) Genomic sequencing of single microbial cells from environmental samples. Current Opinion in Microbiology 11:198-204
  • Kooistra WHCF, Sarno D, Balzano S, Gu H, Andersen R, Zingone A (2008) Global diversity and biogeography of Skeletonema species (Bacillariophyta). Protist 159:177-193
  • Kraus TEC, Bergamaschi BA, Hernes PJ, Spencer RGM, Stepanauskas R, Kendall C, Losee RF, Fujii R (2008) Assessing the contribution of wetlands and subsided islands to dissolved organic matter and disinfection byproduct precursors in the Sacramento-San Joaquin River Delta: A geochemical approach. Organic Geochemistry 39:1302-1318
  • Lewis-Rogers N, McClellan DA, Crandall KA (2008) The evolution of foot-and-mouth disease virus: Impacts of recombination and selection. Infection, Genetics and Evolution 8:786-798
  • Limsakul A, Goés J (2008) Empirical evidence for interannual and longer period variability in Thailand surface air temperatures. Atmospheric Research 87:89-102
  • Llewellyn CA, Tarran GA, Galliene CP, Cummings DG, De Menezes A, Rees AP, Dixon JL, Widdicombe CE, Fileman ES, Wilson WH (2008) Microbial dynamics during the decline of a spring diatom bloom in the Northeast Atlantic. Journal of Plankton Research 30:261-273
  • Ma S, Luther III GW, Keller J, Madison AS, Metzger E, Megonigal JP, Emerson D (2008) Solid-state Au/Hg microelectrode for the investigation of Fe and Mn cycling in a freshwater wetland: implications for methane production. Electroanalysis 20:233-239.
  • Matrai P, Tranvik L, Leck C, Knulst JC (2008) Are high Arctic surface microlayers a potential source of aerosol organic precursors? Marine Chemistry 108:109-122
  • McClellan DA, Ellison DD (2008) Assessing and improving the accuracy of detecting protein adaptation with the TreeSAAP analytical software. Proceedings of the Biotechnology and  Bioinformatics Symposium 5:11-17.
  • Neubauer S, Emerson D,  Megonigal P (2008) Microbial oxidation and reduction of iron in the root zones of wetland plants  and mobility of heavy metals. In: Biophysico-Chemical Processes of Heavy Metals and Metalloids in Soil Environments. A. Violante, P.M. Huang and G. Stotzsky (eds). IUPAC. 339-371
  • Orcutt KM, Gundersen K, Wells ML, Poulton NJ, Sieracki ME, Smith GJ (2008) Lighting up phytoplankton cells with quantum dots. Limnology and Oceanography: Methods 6:653-658.
  • Rybalka N, Andersen RA, Kostikov I, Mohr KI, Massalski A, Olech M, Friedl T (2008) Testing for endemism, genotypic diversity and species concepts in Antarctic terrestrial microalgae of the Tribonemataceae (Stramenopiles, Xanthophyceae). Environmental Microbiology (On line - http://www3.interscience.wiley.com/journal/121429260/abstract)
  • Twining BS, Baines SBB, Vogt SV, deJonge MD (2008) Exploring Ocean Biogeochemistry by Single-Cell Microprobe Analysis of Protist Elemental Composition Journal of Eukaryotic Microbiology 55: 151 – 162 
  • Wahle R, Bergeron C, Chute AS, Jacobson LD, Chen Y (2008) The Northwest Atlantic deep-sea red crab (Chaceon quinquedens) population before and after the onset of harvesting. ICES Journal of Marine Science 65:862-872
  • Wharam S, Wardill TJ, Goddard V, Donald KM, Parry H, Pascoe P, Pickerill P, Smerdon G, Hawkins AJS (2008) A leucine aminopeptidase gene of the pacific oyster Crassostrea gigas exhibits an unusually high level of sequence variation, predicted to affect structure, and hence activity, of the enzyme. Journal of Shellfish Research 27:1143-1154
  • Wright MS, Baker-Austin C, Lindell AH, Stepanauskas R, Stokes HW, McArthur JV (2008) Influence of industrial contamination on mobile genetic elements: Class 1 integron abundance and gene cassette structure in aquatic bacterial communities. ISME Journal 2:417-428
  • Yentsch CS, Lapointe BE, Poulton N, Phinney DA (2008) Anatomy of a red tide bloom off the southwest coast of Florida. Harmful Algae 7:817-826
  • Yentsch CS, Yentsch CM (2008) Single cell analysis in biological oceanography and its evolutionary implications. Journal of Plankton Research 30:107-117
  • Yoon HS, Grant J, Tekle YI, Wu M, Chaon BC, Cole JC, Logsdon Jr JM, Patterson DJ, Bhattacharya D, Katz LA (2008) Broadly sampled multigene trees of eukaryotes. BMC Evolutionary Biology 8