Bigelow Laboratory for Ocean Sciences

1. Lloyd KG, Schreiber L, Petersen DG, Kjeldsen K, Lever MA, Stepanauskas R, Richter M, Kleindienst S, Lenk S, Schramm A, Jorgensen BB. 2013. Predominant archaea in marine sediments degrade detrital proteins. Nature 496:215-218.
2. Zhaxybayeva O, Stepanauskas R, Mohan NR, Papke RT. 2013. Cell sorting analysis of geographically separated hypersaline environments. Extremophiles 17:265-75.
3. Garcia LG, McMahon KD, Martinez-Garcia M, Srivastava A, Sczyrba A, Stepanauskas R, Grossart HP, Woyke T, Warnecke F. 2013. Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton. The ISME Journal 7:137–147.

1. Stepanauskas, R. 2012. Single cell genomics: an individual look at microbes. Current Opinion in Microbiology, 15:613–620.
2. Martinez-Garcia M, Brazel DM, Swan BK, Arnosti C, Chain PSG, Reitenga KG, Xie G, Poulton NJ, Lluesma Gomez M, Masland DED, Thompson B, Bellows WK, Ziervogel K, Lo CC, Ahmed S, Gleasner CD, Detter CJ, Stepanauskas R. 2012. Capturing single cell genomes of active polysaccharide degraders: An unexpected contribution of Verrucomicrobia. PLoS ONE 7:e35314.
3. Martinez-Garcia M, Brazel DM, Poulton N, Swan BK, Lluesma Gomez M, Masland D, Sieracki ME, Stepanauskas R. 2012. Unveiling in situ interactions between marine protists and bacteria through single cell sequencing. The ISME Journal 6:703-707.
4. Martinez-Garcia M, Swan BK, Poulton NJ, Lluesma Gomez M, Masland D, Sieracki ME, Stepanauskas R. 2012. High throughput single cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton. The ISME Journal 6:113-123.

2011

1. Swan BK, Martinez-Garcia M, Preston CM, Sczyrba A, Woyke T, Lamy D, Reinthaler T, Poulton NJ, Masland D, Lluesma Gomez M, Sieracki ME, DeLong EF, Herndl GJ, Stepanauskas R. 2011. Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean. Science 333:1296-1300
2. Yoon HS, Price DC, Stepanauskas R, Rajah VD, Sieracki ME, Wilson WH, Yang EC, Duffy S, Bhattacharya D. 2011 Single-cell genomics reveals organismal interactions in uncultivated marine protists. Science 332:714-717
3. Hess M, Sczyrba A, Egan R, Kim TW, Chokhawala H, Schroth G, Luo S, Clark DS, Chen F, Zhang T, Mackie RI, Pennacchio LA, Tringe SG, Visel A, Woyke T, Wang Z, Rubin EM. 2011. Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science 331:463-467
4. Heywood JL, Sieracki ME, Bellows W, Poulton NJ, Stepanauskas R. 2011. Capturing diversity of marine heterotrophic protists: one cell at a time. The ISME Journal 5:674-684
5. Woyke T, Sczyrba A, Lee J, Rinke C, Tighe D, Clingenpeel S, Malmstrom R, Stepanauskas R, Cheng J-F. 2011. Contamination-free single cell amplification. PLoS ONE 10:e26161
6. Martinez-Martinez J, Poulton N, Stepanauskas R, Sieracki M, Wilson WH (2011) Targeted Sorting of Single Virus-Infected Cells of the Coccolithophore Emiliania huxleyi. PLOS ONE 6:e22520
7. Fleming EJ, Langdon AE, Martinez-Garcia M, Stepanauskas R, Poulton N, Masland D, Emerson D. 2011. What's new is old: resolving the identity of Leptothrix ochracea using single cell genomics, pyrosequencing and FISH. PLoS ONE 6:e17769
8. Ghai R, Pasic L, Fernandez AB, Martin-Cuadrado AB, Mizuno CM, McMahon KD, Papke RT, Stepanauskas R, Rodriguez-Brito B, Rohwer F, Sanchez-Porro C, Ventosa A, Rodriguez-Valera F. 2011. New abundant microbial groups in aquatic hypersaline environments. Scientific Reports 1:srep00135
9. Reyes-Prieto A, Yoon HS, Moustafa A, Yang EC, Andersen RA, Boo SM, Nakayama T, Ishida KI, Bhattacharya D. 2010. Differential gene retention in plastids of common recent origin. Molecular biology and evolution 27:1530-1537
   

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