Glossary

absorb

to take up radiant energy

acetone

a chemical used to extract chlorophyll from plant matter

autotroph

an organism that makes organic material from inorganic material; a primary producer; examples include plants, phytoplankton, and some bacteria

benthic

in close association with the sea bottom (moving over it, attached to it, or borrowing into it)

biomass

the total amount of living material in a system

carnivore

an organism that eats animal matter (meat)

chlorophyll

a group of photosynthetic pigments used in photosynthesis; gives plants their green color

CTD

abbreviated term for equipment on the water sampling rosette; measures conductivity, temperature and depth

cytoplasm

protoplasm of a cell outside of the cell's nucleus

density

mass per unit volume of a substance

DOC

dissolved organic carbon; important source of carbon for marine bacteria

diversity

a measure of the number of species and their relative abundance

DNA

deoxyribonucleic acid; a complex molecule that contains the genetic code for almost all organisms

eukaryotic

organisms with a membrane-bound nucleus; includes members of the Animal, Plant, Protist and Fungi kingdoms

flow cytometry

a technique used to measure the optical properties of cells in a flow stream rapidly passing one-at-a-time in front of a laser beam with detectors measureing fluorescence and light scatter

fluorescent

describes matter that absorbs light then emits it at a longer wavelength

fluorometer

equipment used to measure fluorescence
food chain
a linear depiction of energy flow; each organism feeds on and derives energy from the preceding organism
food web
a complex network of many interconnected feeding relationships; a more realistic portrayal of energy flow than a food chain

halocline

the water layer in which salinity changes most rapidly with increasing depth

herbivore

an organism that eats plant matter

heterotroph

an organism that obtains its organic matter from the environment (usually from autotrophs); a consumer

micrometer

a unit of measure representing one millionth of a meter

nutrient

any number of inorganic or organic compounds used primary in nutrition; nutrients are cycled through food webs

ocean optics

the science that deals with the properties of light in the water column and how it is affected by the presence/absence of algae and other materials

omnivorous

describes an organism that eats both plant and animal matter

pelagic

free-living in the water column; not attached to substrate

photic zone

the upper layer of the water column where sunlight can penetrate and photosynthesis can take place

photosynthesis

the process of using the sun's energy to convert carbon dioxide and water into carbohydrates and oxygen; carried out by green plants, algae and cyanobacteria

photosynthetic pigments

molecules responsible for light harvesting in plants, phytoplankton and some bacteria

phytoplankton

plankton that photosynthesizes (autotrophic)

piscivorous

describes an organism that eats fish

plankton

organisms that are suspended or floating, and do not have sufficient swimming abilities to avoid transport by major water movements

planktivorous

describes an organism that eats plankton

primary productivity

the rate at which organic material is synthesized from inorganic material through photosynthesis

radioactive tracers

a radioactive substance that is incorporated into a biological pathway and that can be followed to allow study of the pathway

RNA

ribonucleic acid; a complex molecule that fuction in protein synthesis

runoff

fresh water from rain, snow and ice that flows on the ground into streams, lakes, wetlands and oceans

salinity

a measure of the amount of dissolved salts in seawater

scatter

the process of bending or casting back radiant energy

slide

small flat glass sheets on which can be mounted various types of samples for investigation under a microscope

thermocline

the water layer in which temperature changes most rapidly with increasing depth

top-level predator

the terminal organism of a food web or chain; often does not have a natural predator

trench

a narrow, steep-sided depression in the seafloor below 6000m in depth

trophic

relating to food or nutrition

ultraviolet light

radiation having wavelengths shorter than the visible spectrum but longer than X-rays (~1-400nm)

upwelling

the process by which deep waters are brought to the surface by wind action

virus

an infectious agent that is not considered to be truly "alive"; consists of a protein coat around genetic material; contributes to production of dissolved organic matter in the ocean

zooplanktivorous

describes an organism that eats zooplankton

zooplankton

plankton that obtains its organic matter from autotrophs; a consumer

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